Materials and Computational Chemistry (MCC)
Introduction
Scientific research is pursued through the combination of three essential practices: theory, experiment, and computation. Since the emergence of modern computers, computation for modelling and simulation of experiments has led to the emergence of Computational Science. High-performance computing (HPC) has a major role to play to process data and perform complex calculations at high speeds. HPC applications are the drivers of the development of both hardware and software for HPC systems. Computations on HPC for solving many real-life scenarios to solve complex problems in science, business, and engineering have immense potential to influence the economy and the quality of life for human kind. Materials science is a field involving research and discovery of materials. Computational materials science uses modeling, simulation, theory, and informatics to understand materials. The main goals include discovering new materials, determining material behavior and mechanisms, explaining experiments, and exploring materials theories. It is one sub-discipline of both computational science and engineering, containing significant overlap with computational chemistry and computational physics
The outcome of the project “Materials and Computational Chemistry” under National Supercomputing Mission (NSM) is the set of codes (software) developed by the investigators to perform the computations to study properties of atoms, molecules, clusters, alloys, bio-molecules, and composite materials using high-performance computing (HPC).
Project Summary
Development of indigenous scientific codes:(l)Linear Scaling DFT,(2)Multi-Reference Methods with hybrid QM-MM approaches,(3)Excited state dynamics toolkit, (4) Multiscale Microstructure Simulation and Modelling, (5) GUI for home-grown quantum chemistry code
Objective
Development of indigenous scientific codes
- AMDKIIT: Linear scaling hybrid-DFT code for ab initio molecular dynamics
- ANN-CI: Computational chemistry, code augmented by machine learning for studying complex biological systems
- LITESOPH: Layer Integrated Toolkit and Engine for Simulations of Photo-induced phenomena is a toolkit for simulations of photo-induced phenomena
- μ2mech: It is a multiscale modeling approach combining atomistic and phase-field simulations for microstructure modeling during solid-state phase transformations.
- MTASpec: Ouantum chemistry code based on the fragmentation-based molecular tailoring approach.
- Materials and Computational Chemistry (MSCC) application support* activity: Porting and deployment of the five** indigenous software on NSM systems and application support [C-DAC, Pune]
*Since March 2023, Materials and Computational Chemistry application support activity was added [on the reccomendations of the PMC and TAC] for the proliferation of the five indigenous software developed.
Deliverables
Five indigenously developed software in the domain of Materials and Computational Chemistry, Publications in reputed international journals, One training workshop for all five software.
Partners
- C-DAC
- IIT Kanpur
- IISER Bhopal
- S P Pune University
Achievements
Five indigenously developed and open-source software:
- AMDKIIT [Linear scaling DFT],
- ANN-CI [Multi-reference methods based on MLwith QM/MM methods],
- LITESOPH [Excited state dynamics toolkit],
- μ2mech [Multiscale Microstructure Simulation and Modelling], and
- MTA Spec [GUI for home-grown Quantum Chemistry code].
PhD Thesis(Six):
- Ab Initio Molecular Dynamics with Hybrid Density Functionals: Implementation and Application by Sagarmoy Mandal [IIT Kanpur] (July, 2020).
- Theoretical investigation of excited state phenomena in photoprotection and self-repair of DNA by Satyajit Mandal [IISER Bhopal] (November 2021).
- Renormalization and machine learning approaches for strongly correlated systems - development and applications, by Madhumita Rano [IACS Kolkata] (2023).
- Development of Machine Learning Approaches for Strongly Correlated Systems, by Sumanta K. Ghosh [IACS Kolkata] (2023).
- Accelerating Excited State Calculations, by Koushik Seth[IACS Kolkata] (2024).
- Speeding-up Hybrid Density Functional based Ab Initio Molecular Dynamics Simulation by Ritama Kar [IIT Kanpur] (Expected submission: April, 2025).
Publications
31 Publications in International Journals from five sub-projects
- Achieving an Order of Magnitude Speedup in Hybrid-Functional- and Plane-Wave-Based Ab Initio Molecular Dynamics: Applications to Proton-Transfer Reactions in Enzymes and in Solution, S. Mandal, V. Thakkur, B. Meyer, N. N. Nair, J. Chem. Theory Comput. (2021), 17, 4, 2244.
- Improving the scaling and performance of multiple time stepping-based molecular dynamics with hybrid density functionals, S. Mandal, R. Kar, T. Klöffel, B. Meyer, N. N. Nair, J. Comput. Chem. (2022), 43 (9), 588.
- Hybrid Functional and Plane Waves based Ab Initio Molecular Dynamics Study of the Aqueous Fe2+/Fe3+ Redox Reaction, S. Mandal, R. Kar, B. Meyer, N. N. Nair, ChemPhysChem (2023), 24, e202200617.
- Speeding-up Hybrid Functional-Based Ab Initio Molecular Dynamics Using Multiple Time-stepping and Resonance-Free Thermostat, R. Kar, S. Mandal, V. Thakkur, B. Meyer, and N. N. Nair, J. Chem. Theory Comput. (2023), 19 (22), 8351.
- Dynamics of Anthracene Excimer Formation within a Water-soluble Nanocavity at Room Temperature, Aritra Das, Ashwini Danao, Shubhojit Banerjee, A. Mohan Raj, Gaurav Sharma; Rajeev Prabhakar, Varadharajan Srinivasan, Vaidhyanathan Ramamurthy, and Pratik Sen, Am. Chem. Soc. (2021), 143, 2025.
- Size and Composition Dependence of Plasmonic Excitations in Transition Metal Dichalcogenide Nanoflakes, Paresh C. Rout, Vignesh K. Balaji, Nesta B. Joseph, Shalini Tomar, and Varadharajan Srinivasan, Phys. Chem. C (2023), 127, 33, 16464.
- Universal Measure for the Impact of Adiabaticity on Quantum Transitions, Ritesh Pant, Pramod K. Verma, Chakradhar Rangi, Elious Mondal, Mansi Bhati, Varadharajan Srinivasan, and Sebastian Wüster, Rev. Lett. (2024), 132, 126903.
- Ultrafast Processes in Upper Excited Singlet States of Free and Caged 7-Diethylaminothiocoumarin, Abhijit Dutta, Sujit Kumar Ghosh, Satyajit Mandal, Varadharajan Srinivasan, Vaidhyanathan Ramamurthy, and Pratik Sen, Phys. Chem. A (2024), 128, 33, 6853.
- A supramolecular approach towards the photorelease of encapsulated caged acids in water: 7‑diethylaminothio‑4‑coumarinyl molecules as triggers, Sujit Kumar Ghosh, Shreya Chatterjee, Paras Pratim Boruah, Satyajit Mandal, José P. Da Silva, Varadharajan Srinivasan, and Vaidhyanathan Ramamurthy, Photochem Photobiol Sci (2024), 23, 2057.
- Plasmon Induced Charge Transfer Dynamics in Metallic Nanoparticle-MoSe2 Nanoflake Heterostructures, Pramod K. Verma, Vignesh B. Kumar, and Varadharajan Srinivasan, Adv. Optical Mater. (Under Review).
- Support Vector Regression-Based Monte Carlo Simultion of Flexible Water Clusters, S. Bose, S. Chakrabarty, D. Ghosh, ACS Omega, (2020), 5, 7065.
- Configuration interaction trained by neural networks: Application to model polyaromatic hydrocarbons, S.K. Ghosh, M. Rano, D. Ghosh, J. Chem. Phys., (2021), 154, 094117.
- Active learning assisted MCCI to target spin states, K. Seth, D. Ghosh, J. Chem. Theory Comput., (2023), 19, 524.
- Machine learning matrix product state ansatz for strongly correlated systems, S.K. Ghosh, D. Ghosh, J. Chem. Phys., (2023), 158,
- Efficient machine learning configuration interaction for the bond breaking problem, M. Rano, D. Ghosh, J. Phys. Chem.A, (2023), 127, 3705.
- Machine learning the quantum mechanical wavefunction, M. Dey, D. Ghosh, J. Phys. Chem. A, (2023), 127, 9159.
- Computational Techniques for Strong Electron Correlation: Matrix Product State Ansatz and its Optimization, Rano, S. K. Ghosh, and D. Ghosh, “Comprehensive computational chemistry,” in Y. Manual and R. J. Boyd, Eds. Elsevier, Inc., 2024, vol. 1, ch. , p. 121.
- μ2Mech: A software package combining microstructure modeling and mechanical property prediction, A. Linda, A. S. Negi, V. Panwar, R. Chafle, S. Bhowmick, K. Das, and R. Mukherjee, Physica Scripta (2024) 99 (5), art. no. 055256.
- Accelerating microstructure modeling via machine learning: A method combining Autoencoder and ConvLSTM, Ahmad, N. Kumar, R. Mukherjee, and Bhowmick, Phys. Rev. Materials (2023) 7 (8), art. no. 083802, .
- Anomalous coarsening behaviour in Ni-Al alloys: Insights from phase-field simulations, R. Chafle, and Mukherjee, Materials Letters (2020) 279, art. no. 128444.
- Constructing Potential Energy Surface with Correlated Theory for Dipeptides Using Molecular Tailoring Approach, S. S. Khire, N. Gattadahalli, N. D. Gurav, A. Kumar, and S. R. Gadre, ChemPhysChem., (2023), 24, e202200784.
- Enabling Rapid and Accurate Construction of CCSD(T)-Level Potential Energy Surface of Large Molecules Using Molecular Tailoring Approach, S. S. Khire, N. D. Gurav, A. Nandi, and S. R. Gadre, J. Phys. Chem. A (2022), 126, 1458.
- Ring-Polymer Instanton Tunneling Splittings of Tropolone and Isotopomers using a Δ-Machine Learned CCSD(T) Potential: Theory and Experiment Shake Hands, A. Nandi, G. Laude, S. S. Khire, N. D. Gurav, C. Qu, R. Conte, Q. Yu, S. Li, P. L. Houston, S. R. Gadre, J. O. Richardson, F. Evangelista, and J. M. Bowman, J. Am. Chem. Soc. (2023), 145 , 9655.
- Theoretical and experimental study of IR spectra of large phenol-acetylene clusters, Ph(Ac)n for 8 ≤ n ≤ 12E. M. Kabadi, S.S.Khire, S. S. Pingale, S. R. Gadre, T. Chiba, and A.Fujji, J. of the Indian Chem. Society, (2021), 98, 100100.
- MTASpec software for calculating the vibrational IR and Raman spectra of large molecules at ab initio level, (2022), S. S. Khire, N. Sahu, and S. R. Gadre, Phys. Comm., (2022), 270, 108175.
- Development and testing of an algorithm for efficient MP2/CCSD(T) energy estimation of molecular clusters with the 2–body approach, S. S. Khire, and S. R. Gadre, J. Comput. Chem. , (2023), 44, 261.
- Direct and Reliable Method for Estimating the Hydrogen Bond Energies and Cooperativity in Water Clusters, Wn, n = 3 to 8, B. Ahirwar, S. R. Gadre, and M. M. Deshmukh, J. Phys. Chem. A (2020) , 124, 6699.
- Molecular Tailoring Approach for Estimating Individual Intermolecular Interaction Energies in Benzene Clusters, B. Ahirwar, N. D. Gurav, S. R. Gadre, and M. M. Deshmukh, J. Phys. Chem. A (2021), 125, 6131.
- Hydration shell model for expeditious and reliable individual hydrogen bond energies in large water clusters, B. Ahirwar, N. D. Gurav, S. R. Gadre, and M. M. Deshmukh, Phys. Chem. Chem. Phys., (2022), 24, 15462.
- On the Short-Range Nature of Cooperativity in Hydrogen-Bonded Large Molecular Clusters, B. Ahirwar, S. R. Gadre, and M. M. Deshmukh, J. Phys. Chem. A (2023), 127, 4394.
- Combining fragmentation method and high-performance computing: Geometry optimization and vibrational spectra of proteins [submitted to J. Chem. Phys. Special Issue on HPC].
Training and Workshops
Efforts for the proliferation of the software among the user community
- Three-day user workshop conducted on 9-11 October 2023 at C-DAC Pune [25 participants (C-DAC, Pune + 30 (online)]
- Conducted Online workshop for handholding users of the software,
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- AMDKIIT (25 April 2024) [32 participants],
- LITESOPH (22 May 2024) [42 participants ],
- MTASpec (25 July 2024) [45 participants],
- ANN-CI (13 Sept. 2024) [60 participants ], and
- μ2mech (24 Jan. 2025) [50 participants]
- Deployment of these software on NSM systems and facilitating user manuals
- Engagement with the development teams for scaling and performance tuning exercises, identifying scope for further parallelism and code optimization
Workshop Photographs

